GgaINT0103360 @ galGal4
Intron Retention
Gene
ENSGALG00000007647 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr2:16206782-16207570:-
Coord C1 exon
chr2:16207491-16207570
Coord A exon
chr2:16206860-16207490
Coord C2 exon
chr2:16206782-16206859
Length
631 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTCTTTCTTCATCTATACAGAAT
3' ss Score
8.03
Exon sequences
Seq C1 exon
GTAACCTGGCACACAGTAAAAGCAAAACTACAATCAGTTACCAGATGTGGACCCCCCAGAAATCAATCAGTCGTACAAAG
Seq A exon
GTAAGAAAGCTGATATCATGATTCCTTATTGAATCTTAAGTTGAACTACAAAGGCAATACTGTTATTGGTACTAAAAGTAAGCAAGTAACCCCTTCGATGGTTTTTCTCCCTCTCCTATTTTCTTTTCTGTTTAGCTGGATATCTTTGTGTTGTGCAATTCATATTCCTTCCGTGAGGTAAAAAAACTAACATTTCCCTTCTTTCTTGCTATAGTTTTATAAAAGCTTCAGAAAAAAAAAAAAAAGAAAGAAAGAAAAGAAAAGAAAGAAAAAGAAAAAAAATAATAATAATTTGGTGCGAAGTACAGCCATGTTCCATAGAGAATGACCACAATAGCAGTGGTCCACAATAACAGGATCTCAGACGTTGTCAGGGTATTTGTGGCAGTTATTTAGATGCTCTGTTCTCAGACTGTGTCCTCTGTGTGTGAATGTTTGTGTATTGTGCAGCAAAGTAATGTATTGTATTGGTGTAACTACTTTGTGCTAGTGATCATACAGTAACTTTTCCAGTTTTTAGTGCTTTTTTTTTTTAAATTGATGTTCTCAAAGATGTGATTTGAGGCTTTGGAAAGGTCACTATAGGCTCAACATAGATAAGAAGTGTCATTTTCTTTCTTCATCTATACAG
Seq C2 exon
AATGAATCAGGAGATACTGGACATCATCCAAGAGAGACAACCAGTATGAAAACACAAACAGTCGCTTCTTATTTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647:ENSGALT00000012375:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=NA C2=0.654
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]