BtaINT0098103 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002123 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr13:26890882-26891491:+
Coord C1 exon
chr13:26890882-26890961
Coord A exon
chr13:26890962-26891413
Coord C2 exon
chr13:26891414-26891491
Length
452 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ACTGTCTTTCTTGGTCTTAGGGT
3' ss Score
10.76
Exon sequences
Seq C1 exon
GTAATCTGCCACATTCTCAAACTAAAAACATAATAAACTATCAAATGAAGACTTCAGAAAAATCAATCAACCTGACAAAG
Seq A exon
GTAAGAAAATGTTTTTCATGGCAGTAAGTCTAAGAACCTAACCTCCTCATACAACAGCAGTATCTGTATGAGAAGGCTAAACAGCCTTTCCGTTCATTTTCTCTTTTTGATCTTTCTTTTCTACTTCAACAGATATTGTTATGTTCATATTACTGCTTGTCACTTAAATAATCATGCATTTCTGATATAGTCCAAACTCCTCTTTTATAATTGGTTTTAATGTTACTCCAAGACCAACTAAATATGTATTAGCTAAAGTCAGAGATACTCACATCCCATGGAAAACTGATTAAAATCCCAATGAGACTGACAAAACAATTACTTTAAAGTAAAAATTCAGTGTTTTGTCATTTTATGTATGTGAAAGGGTAGACTAATGAAGGTTCCATGTGCTCCCTGTAGATCGTAAAGTACAACAGATGCTGAAGCATCACTGTCTTTCTTGGTCTTAG
Seq C2 exon
GGTGAGACTGGAGAAGCCACTCGTCATGCCAGAGAGACGACCAACATGAAAACACAAACAGTTGCATCCTATTTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002123:ENSBTAT00000002745:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.538
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development