MmuINT0104338 @ mm9
Intron Retention
Gene
ENSMUSG00000025716 | Myo3a
Description
myosin IIIA [Source:MGI Symbol;Acc:MGI:2183924]
Coordinates
chr2:22401857-22402455:+
Coord C1 exon
chr2:22401857-22401936
Coord A exon
chr2:22401937-22402377
Coord C2 exon
chr2:22402378-22402455
Length
441 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTCTTCTTTGGTCTCCTTAGGGT
3' ss Score
10.78
Exon sequences
Seq C1 exon
GTAATCTGCCACTTTCTAAAACTAAAAACATAGTAAACTATCAGATGTGGAATTCAGAGAAATCCACAAACCTGACCAAG
Seq A exon
GTAAGACTATGCACCTCCAAGCCTGCTCATCTGCACCTCCTTGGTGCTCCCTTCTGGGCCCTTTGGTGAGAGCAAGTTGTTTTCTCTGTCCCTTTGCTTTTTCTTCTCGATTAGCAGATATGTTTATTATGATTTGTTTATGCTAAAATACCATGCCTTTCTGGTATATTCCTAATTTTTTTTAATCTTCAAATGTTATACAGTTGTCAAATAAAAATGTGCATGTGGCCAAGGTCAGAAACCTTCATGTTCTACACTAGACCAGTCCACACACAAATGAGGTAACCCAGAAATTCTTAAAGTACAAATAGCAATAACATGTGTGGATCTGTGCATTTAATACCTAGACTAAGAAAAACTGATGGAAAATACCACATAGTTCTTGTAGATCACAATGTGCAGAGGATGGTAAGGCCTGACTGTCTTCTTTGGTCTCCTTAG
Seq C2 exon
GGTGAAACTAGAGATGTCACATGCCATGCCTGTGAAACCACCAATGTGAAAACACAAACGGTCTCATCCTATTTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025716-Myo3a:NM_148413:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: