DreEX0050291 @ danRer10
Exon Skipping
Gene
ENSDARG00000057317 | nexn
Description
nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
Coordinates
chr8:18486398-18488451:-
Coord C1 exon
chr8:18488263-18488451
Coord A exon
chr8:18487369-18487560
Coord C2 exon
chr8:18486398-18486445
Length
192 bp
Sequences
Splice sites
3' ss Seq
CATAATCTATTCACTCGCAGGTT
3' ss Score
8.56
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
GGTCAGGAAGATGAGGACACTCAGGACACACATGGAGAGAAGGAAGAATTCAGACCAGGAAAACTTCGACTCAGTTTTGAAGAGCTGGAAAGACAGAGGCTGGAAGACGAACATAAGCGGGTTGAGGAAGAGAGGAAAAGACGCATTGAAGAAGAAAGAAAGGCCTTTGCTGAGGCCAGAAAGAGCATG
Seq A exon
GTTATAAATAGTGACGATGACATCCTGCTGGCCATGATCAACTCAGACGGGGCCAAACCCGGGAAGTTGGCCATTAGCTTTGAGGATTTGGAAAGACAGAGACAAGAAGAGGAGCAGAAACGCAAAGAGGAGGAGGCCAAGCGACGCCTGGAAGAGGAGAAAAGACTCTTCGCTGAAGCTCGAAAGAGCATG
Seq C2 exon
AGCCCTGGAGTGGATCAGGATAATATGACTGGATGTGGAGATAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057317-'14-20,'14-19,15-20
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.873 A=0.938 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGGAAGATGAGGACACTC
R:
TTCTTTATCTCCACATCCAGTCAT
Band lengths:
237-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]