RnoEX0059437 @ rn6
Exon Skipping
Gene
ENSRNOG00000012512 | Nexn
Description
nexilin (F actin binding protein) [Source:RGD Symbol;Acc:708354]
Coordinates
chr2:257461130-257467078:-
Coord C1 exon
chr2:257466908-257467078
Coord A exon
chr2:257464972-257465160
Coord C2 exon
chr2:257461130-257461327
Length
189 bp
Sequences
Splice sites
3' ss Seq
ATAAGTAGTTTCTTTATTAGGTA
3' ss Score
2.72
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GATGATGAAACAGAGGCCAAAAAAGAATCACGTTTTCCTGGAAAATTGAAATCAACTTTTGAAGAACTGGAACGACAAAGACAAGAAAACCGCAAGAAGCAAGCAGAAGAGGAAGCAAGACGGCGCTTAGAAGAAGAGAGGCGTGCCTTTGAGGAAGCAAGGCGGAACATG
Seq A exon
GTAAACGAGGAGGATGAAAGCCAAGACACAGAAACGGTTTTTAAAGAGTACCGCCCAGGAAAACTCCGACTCAGTTTTGAGGAAATAGAAAGGCAAAGGAGAGAAGAGGAAAAACGAAAGGCCGAGGAGGAGGCGCGAAGGAGGATGGAGGAGGAGAAGAAGGCATTTGCTGAAGCCAGGAGAAGCATG
Seq C2 exon
GTATTAGATGATGATTCCCCAGAGATTTATAAAGCAGTCTCTCAAGAATCTCTAACGCCTGGAAAACTGGAAATTAATTTTGAACAATTATTAAGACAAAAAATGGAAGAAGAAAGACGACGAACAGAGGAAGAACGGAGGCAAAAACTAGAAATGGAGAAACAGGAATTTGAACAACTGAGACAAGAAATGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012512_MULTIEX1-4/5=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.762 C2=0.848
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACAAAGACAAGAAAACCGC
R:
GCCTCCGTTCTTCCTCTGTTC
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]