GgaEX0013102 @ galGal3
Exon Skipping
Gene
ENSGALG00000008945 | NEXN
Description
NA
Coordinates
chr8:19622117-19629162:-
Coord C1 exon
chr8:19628989-19629162
Coord A exon
chr8:19626326-19626511
Coord C2 exon
chr8:19622117-19622317
Length
186 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCATTTTCTGTAAAGATA
3' ss Score
5.75
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
GGTGAAAATCAGGACAGTGAAACACAGTCGTCTCTGTCTCCTGGTAAGCTGAAAGTAACTTTTGAAGAACTTGAAAGACAAAGACAGGAAAACCAAAGGCGGCAAGCAGAGGTAGAAGCAAAACAGCGCTTAGAAGAGGAAAAACGTGCCTTTGAAGAAGCTAGACAGCAAATG
Seq A exon
ATAAATGAAGGTGGCCATGAAGAATCTGAAAATTCTGGTAGAGAATTCCGTCCTGGTAAACTTAGGCTCAGTTTTGAGGAGATGGAAAGACTGAGGAGAGAAGAGGAAAAGAGGAGAGCAGAACAAGATGCAAGAAGACGCATAGAAGAAGAGAGAAGGGCGTTTGCTGAAGCACGGAAGAACATG
Seq C2 exon
GTGCTGGATGATGATGAATCACCGGAAATGTTTAAAACATTTTCTCAAGAATCTCTCATCCCTGGTAAACTGGAAATTAATTTTGAGGAGATGCTGAGACAAAAGATGGAAGAAGAAAAGAGACGCACGGAAGAGGAGCGTAGGCAAAAGTTGGAAATGGAAAAGCAAGAATTCCAACAACTAAGACAAGAAATGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.823 C2=0.896
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGGAAAACCAAAGGCGG
R:
CCAACTTTTGCCTACGCTCCT
Band lengths:
247-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]