DreEX0050290 @ danRer10
Exon Skipping
Gene
ENSDARG00000057317 | nexn
Description
nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
Coordinates
chr8:18487369-18490974:-
Coord C1 exon
chr8:18490795-18490974
Coord A exon
chr8:18488263-18488451
Coord C2 exon
chr8:18487369-18487560
Length
189 bp
Sequences
Splice sites
3' ss Seq
TAATGCACTGTTAATCACAGGGT
3' ss Score
3.44
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
Exon sequences
Seq C1 exon
CTGGACGATGGAGAGCCTCAACCCAAAGAGAAAGAGCAGGTGACTCCTGGAAAATTGCGTCTGACCTTTGAGGAACAGGAGAAAGAGCGACAGGAACAGCAGAGAAAACAGGCGGAGGAAGAGGCCCGGCGAAGACTGGAAGAAGAAAGAAAAGCTTTTGAAGAGGCCAAGCTGGGCATG
Seq A exon
GGTCAGGAAGATGAGGACACTCAGGACACACATGGAGAGAAGGAAGAATTCAGACCAGGAAAACTTCGACTCAGTTTTGAAGAGCTGGAAAGACAGAGGCTGGAAGACGAACATAAGCGGGTTGAGGAAGAGAGGAAAAGACGCATTGAAGAAGAAAGAAAGGCCTTTGCTGAGGCCAGAAAGAGCATG
Seq C2 exon
GTTATAAATAGTGACGATGACATCCTGCTGGCCATGATCAACTCAGACGGGGCCAAACCCGGGAAGTTGGCCATTAGCTTTGAGGATTTGGAAAGACAGAGACAAGAAGAGGAGCAGAAACGCAAAGAGGAGGAGGCCAAGCGACGCCTGGAAGAGGAGAAAAGACTCTTCGCTGAAGCTCGAAAGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057317-'12-19,'12-16,14-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.873 C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGCCTCAACCCAAAGA
R:
AAGCTAATGGCCAACTTCCCG
Band lengths:
252-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]