MmuEX0031535 @ mm9
Exon Skipping
Gene
ENSMUSG00000039103 | Nexn
Description
nexilin [Source:MGI Symbol;Acc:MGI:1916060]
Coordinates
chr3:151910050-151915920:-
Coord C1 exon
chr3:151915772-151915920
Coord A exon
chr3:151910897-151911067
Coord C2 exon
chr3:151910050-151910238
Length
171 bp
Sequences
Splice sites
3' ss Seq
TAACAAGTTTGTTTGCATAGGAT
3' ss Score
4.65
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
Exon sequences
Seq C1 exon
GGACAGTTAAAGGTAAATTCGATGAAATGGAGAAACACAGACAGGAAGAACAAAGAAAGAGAACAGAAGAAGAAAGAAAACGCAGAATTGAGCAGGATCTGTTAGAAAAGAGGAAAATACAGCGCGAATTAGCAAAAAGAGCGGAGCAG
Seq A exon
GATGATGAAACAGAGGCCAAAAAAGAATCACATTTTCCTGGAAAATTGAAATCAACTTTTGAAGAACTGGAACGACAAAGACAAGAAAATCGCAAGAAGCAAGCGGAAGAGGAAGCGAGACGACGCTTAGAAGAAGAGAGACGTTCCTTTGAGGAGGCGAGAAGGCACATG
Seq C2 exon
GTAAATGAGGAGGATGAAAACCAAGATAGAGAAACAGTTTTTAAAGAGTACCGCCCAGGAAAACTCAAACTCAGTTTTGAGGAAATAGAAAGGCAAAGGAGAGAAGACGAAAAACGAAAAGCAGAGGAGGAGGCCCGAAGGAGAATAGAGGAAGAGAAGGCGGCATTTGCTGAAGCAAGGAGAAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039103_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.940 A=1.000 C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGAATTGAGCAGGATCTGT
R:
TTCAGCAAATGCCGCCTTCTC
Band lengths:
243-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: