BtaEX6016954 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008921 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr3:67019329-67021656:-
Coord C1 exon
chr3:67021459-67021656
Coord A exon
chr3:67021189-67021365
Coord C2 exon
chr3:67019329-67019517
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTTCATTATGTTTTCTTAGGAT
3' ss Score
9.39
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
Exon sequences
Seq C1 exon
GAAGGAGATGAGTCACTGCTTGTAACAGTGGTACCTGTCAAATCACACAAAACCTCTGGAAAAATAAAAAAGAATTTTGAAGATATAGAAAAAGAACGAGAAGAGAAGGAAAGGGTCAAGTATGAAGAAGATAAAAGAATAAGATGTGAAGAGCAACGCCGATCTCTCAAGGAAGCAAAGTGTCTTTCGTTGGTCATG
Seq A exon
GATGATGAACTAGAAAGTGAGGCAAAAAAAGAATCACTTTCTTCTGGAAAATTGAAACTGACTTTTGAAGAATTGGAAAGACAAAGACAAGAAAACCGAAGGAAGCAAGCTGAGGAGGAAGCAAGAAAACGTTTAGAAGAAGAGAGGCGTGCTTTTGAAGAAGCAAGGCGGCAAATG
Seq C2 exon
GTAAATGAAGAGGAGGAAAACCAAGACACAGAAAACATTTTTAAAGGGTACCGCCCTGGTAAACTCAAGCTCAGTTTTGAAGAAATAGAAAGACAAAGGAGAGAAGATGAAAAAAGGAAAGCAGAAGAAGATGCCAGAAGAAGAATAGAGGAAGAAAAGAAGGCATTCGCTGAAGCAAGGAGAAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008921-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=0.814 C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGAAGAGCAACGCCGAT
R:
GCTTCTCCTTGCTTCAGCGAA
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]