DreEX0050289 @ danRer10
Exon Skipping
Gene
ENSDARG00000057317 | nexn
Description
nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
Coordinates
chr8:18488263-18491287:-
Coord C1 exon
chr8:18491087-18491287
Coord A exon
chr8:18490795-18490974
Coord C2 exon
chr8:18488263-18488451
Length
180 bp
Sequences
Splice sites
3' ss Seq
AACTTCAATGTTTAAAAAAGCTG
3' ss Score
0.12
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
GAAGGTGATGACAGTCTTTTGGTGCGAGTGGTGCCTGCGAAATCGCAGAAACAACCAGGAAGAATCAAAATCAACTTCGAGGACATGGAGAAGAGCCGAGAAGAGGAACTAAAGAAACGAACCGAGGAGGAGAAGATGAAGCGGTATGATGAAAACCGGCGGTCCGTCCGAGAGTCTAAACGTCGCTCCGTTGTTGAACAG
Seq A exon
CTGGACGATGGAGAGCCTCAACCCAAAGAGAAAGAGCAGGTGACTCCTGGAAAATTGCGTCTGACCTTTGAGGAACAGGAGAAAGAGCGACAGGAACAGCAGAGAAAACAGGCGGAGGAAGAGGCCCGGCGAAGACTGGAAGAAGAAAGAAAAGCTTTTGAAGAGGCCAAGCTGGGCATG
Seq C2 exon
GGTCAGGAAGATGAGGACACTCAGGACACACATGGAGAGAAGGAAGAATTCAGACCAGGAAAACTTCGACTCAGTTTTGAAGAGCTGGAAAGACAGAGGCTGGAAGACGAACATAAGCGGGTTGAGGAAGAGAGGAAAAGACGCATTGAAGAAGAAAGAAAGGCCTTTGCTGAGGCCAGAAAGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057317-'11-16,'11-13,12-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=1.000 C2=0.873
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATGATGAAAACCGGCGGT
R:
GCTCTTTCTGGCCTCAGCAAA
Band lengths:
245-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]