RnoEX0059436 @ rn6
Exon Skipping
Gene
ENSRNOG00000012512 | Nexn
Description
nexilin (F actin binding protein) [Source:RGD Symbol;Acc:708354]
Coordinates
chr2:257464972-257472277:-
Coord C1 exon
chr2:257472129-257472277
Coord A exon
chr2:257466908-257467078
Coord C2 exon
chr2:257464972-257465160
Length
171 bp
Sequences
Splice sites
3' ss Seq
TAACAAGTTTGTTTTCATAGGAT
3' ss Score
6.08
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
Exon sequences
Seq C1 exon
GGACAGTTAAAGGCAAATTTGATGAAATGGAGAAACACAGACAGGAAGAACAAAGGAAGAGAACAGAAGAGGAGAGAAAACGCAGAATTGAGCAGGATCTGTTAGAAAAGAGGAAAATGCAGCGTGAATTAGCAAAAAGAGCTGAGCAG
Seq A exon
GATGATGAAACAGAGGCCAAAAAAGAATCACGTTTTCCTGGAAAATTGAAATCAACTTTTGAAGAACTGGAACGACAAAGACAAGAAAACCGCAAGAAGCAAGCAGAAGAGGAAGCAAGACGGCGCTTAGAAGAAGAGAGGCGTGCCTTTGAGGAAGCAAGGCGGAACATG
Seq C2 exon
GTAAACGAGGAGGATGAAAGCCAAGACACAGAAACGGTTTTTAAAGAGTACCGCCCAGGAAAACTCCGACTCAGTTTTGAGGAAATAGAAAGGCAAAGGAGAGAAGAGGAAAAACGAAAGGCCGAGGAGGAGGCGCGAAGGAGGATGGAGGAGGAGAAGAAGGCATTTGCTGAAGCCAGGAGAAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012512_MULTIEX1-3/5=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.762
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGAATTGAGCAGGATCTGT
R:
GCTTCTCCTGGCTTCAGCAAA
Band lengths:
255-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]