MmuEX0031533 @ mm9
Exon Skipping
Gene
ENSMUSG00000039103 | Nexn
Description
nexilin [Source:MGI Symbol;Acc:MGI:1916060]
Coordinates
chr3:151911144-151915920:-
Coord C1 exon
chr3:151915772-151915920
Coord A exon
chr3:151912624-151912665
Coord C2 exon
chr3:151911144-151911332
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATGAAATTCTCATTCAATAGATT
3' ss Score
5.21
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GGACAGTTAAAGGTAAATTCGATGAAATGGAGAAACACAGACAGGAAGAACAAAGAAAGAGAACAGAAGAAGAAAGAAAACGCAGAATTGAGCAGGATCTGTTAGAAAAGAGGAAAATACAGCGCGAATTAGCAAAAAGAGCGGAGCAG
Seq A exon
ATTGAGGACATAAACAATACGGGAACCGAGTCCGCATCAGAG
Seq C2 exon
GAAGGAGATGACTCACTACTTATAACAGTGGTACCTGCCAAATCATACAAAACACCTGGAAAAACAAAGGATCCTGAGGACCTGGACAGAGAAGAAGGAAATGGGAGAACCAACCATGAAGAAGATAAAATGAGATATGAAGAAGAGTGCCGAGTTCTCAAAGAAGCAAAATGTCTTTCATTAGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039103_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.940 A=1.000 C2=0.794
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGGAAAATACAGCGCGA
R:
CTGTCCAGGTCCTCAGGATCC
Band lengths:
132-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: