GgaEX0013100 @ galGal4
Exon Skipping
Gene
ENSGALG00000008945 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr8:17829010-17832039:-
Coord C1 exon
chr8:17831884-17832039
Coord A exon
chr8:17830326-17830367
Coord C2 exon
chr8:17829010-17829204
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATGAAATTCTTATTTAATAGATT
3' ss Score
5.65
5' ss Seq
GAGGTAATC
5' ss Score
7.05
Exon sequences
Seq C1 exon
GTCACAGGAACTGTTAAAGGCAAGTTTGCAGAAATGGAGAAGCAAAGACAAGAAGAAGAGAGAAAAAGAACAGAAGAAGAAAGAAAGCGCAGAATTGAGCAGGATATGATTGAGAAAAGGAAAATTCAAAGAGAATTAGCCAAAAAAGCACAGGAG
Seq A exon
ATTGATGACTTTAACAATACGGGAACTGAATCAGCAGCAGAG
Seq C2 exon
GAAGGGGATGATTCGCTACTGGTTACGGTAGTGCCTGTAAAACCCAACAAAACACCTGGGAAGATGAAAATAAACTTTGATAACACAGGAAAAGTAAGAGCAGAACAAAAAAGCAGACCGGATGAAGAAATGAAGCTTAAATATGAGGAACAAAATGAATTCCTTAAGGAAAACAAGTGCCTTTCATTTCTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.846
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGAAGAAAGAAAGCGCAGA
R:
GGGTTTTACAGGCACTACCGT
Band lengths:
132-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]