RnoEX0059434 @ rn6
Exon Skipping
Gene
ENSRNOG00000012512 | Nexn
Description
nexilin (F actin binding protein) [Source:RGD Symbol;Acc:708354]
Coordinates
chr2:257467155-257472277:-
Coord C1 exon
chr2:257472129-257472277
Coord A exon
chr2:257468602-257468643
Coord C2 exon
chr2:257467155-257467343
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATGAAATTCTCATTCAATAGATT
3' ss Score
5.21
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GGACAGTTAAAGGCAAATTTGATGAAATGGAGAAACACAGACAGGAAGAACAAAGGAAGAGAACAGAAGAGGAGAGAAAACGCAGAATTGAGCAGGATCTGTTAGAAAAGAGGAAAATGCAGCGTGAATTAGCAAAAAGAGCTGAGCAG
Seq A exon
ATTGAGGACATAAACAATACGGGAACCGAGTCCGCATCAGAG
Seq C2 exon
GAAGGAGATGACTCACTCCTTATAACAGTGGTCCCTGCCAAATCATACAGAGCAGCTGCAAACAGGAAGGATCCTGAGGACCTGGACAGAGAACACAGGAATGGAAGGGTTAGTCAGGAAGAAGAAAAGACAAGACATGAAGAAGAGTGCAGAGCTCTCAAAGAAGCAAAATGCCTTTCATTGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012512_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.847
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGAATTGAGCAGGATCTGT
R:
CCTGTTTGCAGCTGCTCTGTA
Band lengths:
135-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]