BtaEX0024338 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008921 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr3:67021459-67029239:-
Coord C1 exon
chr3:67029091-67029239
Coord A exon
chr3:67022841-67022882
Coord C2 exon
chr3:67021459-67021656
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATGAAATTCTTATTCAATAGATT
3' ss Score
5.5
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GAACTGTTAAAGGTAAATTTGCTGAAATGGAGAAACAAAGACAAGAGGAACAAAGGAAGAGGACGGAGGAGGAACGAAAACGCCGAATTGAGCAGGACCTTTTAGAGAAGAGGAAGATACAACGTGAATTAGCAAGAAGGGCTGAGCAG
Seq A exon
ATTGAGGACATAAACAATACGGAAACTGAATCAGCACCAGAG
Seq C2 exon
GAAGGAGATGAGTCACTGCTTGTAACAGTGGTACCTGTCAAATCACACAAAACCTCTGGAAAAATAAAAAAGAATTTTGAAGATATAGAAAAAGAACGAGAAGAGAAGGAAAGGGTCAAGTATGAAGAAGATAAAAGAATAAGATGTGAAGAGCAACGCCGATCTCTCAAGGAAGCAAAGTGTCTTTCGTTGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008921_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=1.000 C2=0.439
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGAAGAGGACGGAGGAGG
R:
AGGTACCACTGTTACAAGCAGTG
Band lengths:
134-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development