DreEX0051908 @ danRer10
Exon Skipping
Gene
ENSDARG00000014973 | ntng1a
Description
netrin g1a [Source:ZFIN;Acc:ZDB-GENE-091118-13]
Coordinates
chr24:29514454-29521110:+
Coord C1 exon
chr24:29514454-29514480
Coord A exon
chr24:29520019-29520063
Coord C2 exon
chr24:29521010-29521110
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCTGCTTGCATGCAGTTC
3' ss Score
7.67
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTATGGCAAATTATGCTGGTCCAGTTA
Seq A exon
TTCGGCAGAACATTTCATCCCTAGGTGTTGCTAACCGAAACCAAG
Seq C2 exon
TAGCTCCTCAAGTTGCTTTGTCAACCGTTCCTTCTGTACAAGTTGCAAACAGTAAGAGAGGTAGGATGACTCGATTCATATCCTCTCACTAATATGTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014973-'12-8,'12-7,13-8
Average complexity
C3
Mappability confidence:
75%=50=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]