HsaEX0044071 @ hg38
Exon Skipping
Gene
ENSG00000162631 | NTNG1
Description
netrin G1 [Source:HGNC Symbol;Acc:HGNC:23319]
Coordinates
chr1:107407682-107421143:+
Coord C1 exon
chr1:107407682-107407708
Coord A exon
chr1:107418580-107418645
Coord C2 exon
chr1:107421084-107421143
Length
66 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCCTGATGCGTGCAGATC
3' ss Score
6.53
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTATCCCCAGTATTTCCAGTATTGGTA
Seq A exon
ATCCTCCAAAGTTTAATAGGATATGGCCGAATATTTCTTCCCTTGAGGTTTCTAACCCAAAACAAG
Seq C2 exon
TTGCTCCCAAATTAGCTTTGTCAACAGTTTCTTCTGTTCAAGTTGCAAACCACAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162631-'21-20,'21-19,23-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCCCCAGTATTTCCAGTATTGGT
R:
CTCTCTTGTGGTTTGCAACTTGA
Band lengths:
87-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development