GgaEX0028956 @ galGal4
Exon Skipping
Gene
ENSGALG00000001896 | NTNG1
Description
netrin G1 [Source:HGNC Symbol;Acc:HGNC:23319]
Coordinates
chr8:915848-960453:+
Coord C1 exon
chr8:915848-915874
Coord A exon
chr8:925590-925655
Coord C2 exon
chr8:960227-960453
Length
66 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCCTGATGCATGCAGATC
3' ss Score
6.23
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTATACCCAGTATTTCCAGTATTGGTA
Seq A exon
ATCCTCCAAAGTTTGATAGGATATGGCCGAATATTTCTTCTCTTGAGGTTTCTAAACCAAATCAAG
Seq C2 exon
CAAATGTGTGTGACAATGAACTCCTGCACTGCCAGAATGGAGGGACATGCATCAACAATGTGCGGTGCCAGTGCCCTCCGGCCTACACTGGCATCTTATGCGAGAAGCTTAAGTGTGAAAGGGATCCAGGAGGCTGCAGCCAAAGCTCCGCCCAGGGGGCAATGTCACACTGTCCCTTATTACTGCTGATGGCCCTACTAGGAGCAGCTGGGGTTCACATGTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001896_MULTIEX1-7/10=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005319=Laminin_EGF=PD(6.1=3.9),PF079748=EGF_2=PD(91.7=43.4)
Main Skipping Isoform:
ENSGALT00000002932fB10073
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATACCCAGTATTTCCAGTATTGGT
R:
GCTGCAGCCTCCTGGATCC
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]