GgaEX0028957 @ galGal4
Exon Skipping
Gene
ENSGALG00000001896 | NTNG1
Description
netrin G1 [Source:HGNC Symbol;Acc:HGNC:23319]
Coordinates
chr8:925590-960453:+
Coord C1 exon
chr8:925590-925655
Coord A exon
chr8:927587-927646
Coord C2 exon
chr8:960227-960453
Length
60 bp
Sequences
Splice sites
3' ss Seq
TCATTTTATTACCTATCTAGTTG
3' ss Score
6.19
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
ATCCTCCAAAGTTTGATAGGATATGGCCGAATATTTCTTCTCTTGAGGTTTCTAAACCAAATCAAG
Seq A exon
TTGCTCCCAAATTATCTATGACAACTGTTTCTTCTGTTCAAGTTGCAAACCACAAGAGAG
Seq C2 exon
CAAATGTGTGTGACAATGAACTCCTGCACTGCCAGAATGGAGGGACATGCATCAACAATGTGCGGTGCCAGTGCCCTCCGGCCTACACTGGCATCTTATGCGAGAAGCTTAAGTGTGAAAGGGATCCAGGAGGCTGCAGCCAAAGCTCCGCCCAGGGGGCAATGTCACACTGTCCCTTATTACTGCTGATGGCCCTACTAGGAGCAGCTGGGGTTCACATGTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001896_MULTIEX1-8/10=7-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005319=Laminin_EGF=PD(6.1=3.9),PF079748=EGF_2=PD(91.7=43.4)
Main Inclusion Isoform:
ENSGALT00000002932fB3647
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGTTTGATAGGATATGGCCGA
R:
CTGGCACCGCACATTGTTGAT
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]