BtaEX0022180 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014530 | MGC139448
Description
Bos taurus netrin G2 (NTNG1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080369]
Coordinates
chr3:35969787-36050479:-
Coord C1 exon
chr3:36050453-36050479
Coord A exon
chr3:36037111-36037170
Coord C2 exon
chr3:35969787-35971035
Length
60 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTAAACCTATCCAGTTG
3' ss Score
5.17
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTATCCCCAGTATTTCCAGTATTGGTA
Seq A exon
TTGCTCCCAAATTAGCTTTGTCAACAGTTTCTTCTGTTCAAGTTGCAAACCACAAGAGAG
Seq C2 exon
CGAATGTCTGCGACAACGAGCTCCTGCACTGCCAGAACGGAGGGACGTGCCACAACAACGTGCGCTGCCTGTGCCCAGCCGCGTACACGGGCATCCTGTGCGAGAAGCTGCGGTGCGAGGAGGCGGGCAGCTGCGGCCCCGACTCCGGCCAGGGCGCGCCCCCGCGCGGCTCCCCCGCGCTGCTGTCGCTGCTGGCCGCTCTGCTGGGGACAGCCGGCCCCCTGGGCATCTAGGCGGCGCACCCAGCCACCAGACGGGCCGTGCTCTGGGGAAGCAAACACAGCCCCAGCATTTGCTACTAACATAGGAAACCCGCTCTCAGACACTCCCACTCAAACACAGTGTACAAAGAAGGCCTAACTGAACTAAGCCATATTTATCAGCCGTGGACAGCACACCTGAGTCAAGACTGTTAATTTCTGACTCCCAGAGGAGTTGGCAGCTGTTGATATTATCACTGCGAATCACATTGCCAGCTGCAGAGCTTACCACCCATCGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014530_MULTIEX1-2/4=C1-C2
Average complexity
ME(2-3[98=100];2-4[98=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF079748=EGF_2=WD(100=39.7)
Main Inclusion Isoform:
ENSBTAT00000019313fB4256
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCAGTATTTCCAGTATTGGT
R:
GCAGCTTCTCGCACAGGATG
Band lengths:
135-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development