RnoEX0061346 @ rn6
Exon Skipping
Gene
ENSRNOG00000031136 | Ntng1
Description
netrin G1 [Source:RGD Symbol;Acc:1563465]
Coordinates
chr2:212696624-212771566:-
Coord C1 exon
chr2:212771540-212771566
Coord A exon
chr2:212758336-212758395
Coord C2 exon
chr2:212696624-212699499
Length
60 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTCAAACCTATGCAGTTG
3' ss Score
5.81
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTATCCCCAGCATTTCCAGTATTGGTA
Seq A exon
TTGCTCCCAAATTAGCTTTGTCAACAGTTTCTTCTGTTCAAGTTGCAAACCACAAGCGAG
Seq C2 exon
CTAATGTCTGCGACAATGAGCTCCTGCACTGCCAGAATGGAGGGACCTGCCACAACAATGTGCGCTGTGTGTGCCCAGACGCCTACACCGGCATCCTCTGTGAGAAGCTACGGTGCGAAGAGGCGGGCAGCTGTGGCTCCGACTCTGGCCAGGGAGCACCCCCGCGGGGCTCCCCTGCACTGCTGCTGCTGACCGTGCTGCTGGGGACTGCCAGTCCCCTGGTTTTCTAGGGGTCACACCCAGCCCTCCGACAGGCCTGTGCTGTGGGGGAAGCAGACACAACCCAAGCGATTGCTCCCGACATAGAAAACACGCACACCCACTCCAACACAGTGTATAGAAGAAGAGGGCCTAACTGAACTAAGCCATATCTCTCGGAACTGGACAGCACAGCGCGCATCATCGGAGTCAAGACTGTTCATCACTGACTCCAGAGGAATTGGCAGCTGTCGCTATCGTCACTGCAAATCTCATCGCCAGCTGCAGAGCTGATTGCGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031136_MULTIEX1-2/4=C1-C2
Average complexity
ME(2-3[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005319=Laminin_EGF=PD(10.0=6.5),PF079748=EGF_2=PD(91.7=42.9)
Main Inclusion Isoform:
ENSRNOT00000066218fB9924
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGCATTTCCAGTATTGGT
R:
CTCTTCGCACCGTAGCTTCTC
Band lengths:
145-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]