RnoEX0061342 @ rn6
Exon Skipping
Gene
ENSRNOG00000031136 | Ntng1
Description
netrin G1 [Source:RGD Symbol;Acc:1563465]
Coordinates
chr2:212696624-212751707:-
Coord C1 exon
chr2:212751540-212751707
Coord A exon
chr2:212746524-212746658
Coord C2 exon
chr2:212696624-212699499
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTGTTGTCTTGTTTCTACAGAGT
3' ss Score
10.07
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
ACTGTGAATGCTTCGGCCACTCCAATCGGTGCAGTTATATCGATCTGCTAAACACAGTCATTTGCGTGAGCTGTAAACACAACACTAGAGGGCAGCACTGTGAGTTATGCAGGCTGGGCTACTTCAGAAATGCTTCTGCACAGCTGGACGATGAGAATGTGTGCATAG
Seq A exon
AGTGTTATTGTAACCCTTTGGGCTCAATCCATGATCGTTGTAATGGCTCAGGATTTTGTGAGTGTAAGACTGGAACGACAGGGCCTAAATGTGATGAGTGTCTGCCAGGAAATTCCTGGTACTACGGCTGTCAAC
Seq C2 exon
CTAATGTCTGCGACAATGAGCTCCTGCACTGCCAGAATGGAGGGACCTGCCACAACAATGTGCGCTGTGTGTGCCCAGACGCCTACACCGGCATCCTCTGTGAGAAGCTACGGTGCGAAGAGGCGGGCAGCTGTGGCTCCGACTCTGGCCAGGGAGCACCCCCGCGGGGCTCCCCTGCACTGCTGCTGCTGACCGTGCTGCTGGGGACTGCCAGTCCCCTGGTTTTCTAGGGGTCACACCCAGCCCTCCGACAGGCCTGTGCTGTGGGGGAAGCAGACACAACCCAAGCGATTGCTCCCGACATAGAAAACACGCACACCCACTCCAACACAGTGTATAGAAGAAGAGGGCCTAACTGAACTAAGCCATATCTCTCGGAACTGGACAGCACAGCGCGCATCATCGGAGTCAAGACTGTTCATCACTGACTCCAGAGGAATTGGCAGCTGTCGCTATCGTCACTGCAAATCTCATCGCCAGCTGCAGAGCTGATTGCGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031136-'8-10,'8-8,9-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.7)
A:
PF0005319=Laminin_EGF=PU(88.0=95.7),PF079748=EGF_2=PU(5.6=4.3)
C2:
PF0005319=Laminin_EGF=PD(10.0=6.5),PF079748=EGF_2=PD(91.7=42.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTCCAATCGGTGCAGTTA
R:
TCACAGAGGATGCCGGTGTAG
Band lengths:
255-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]