GgaEX0002305 @ galGal3
Exon Skipping
Gene
ENSGALG00000001896 | NTNG1
Description
NA
Coordinates
chr8:935682-964306:+
Coord C1 exon
chr8:935682-935849
Coord A exon
chr8:941710-941847
Coord C2 exon
chr8:963654-964306
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTGTTGTCTTGTTTCTGCAGACT
3' ss Score
10.86
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
ACTGTGAATGCTTCGGGCACTCCAACCGGTGCAGTTACATCGAGCTGCTCAATACGGTCATTTGCGTGAGCTGTAAGCACAACACTAGAGGTCAGCACTGTGAGTTATGCAGGCTGGGCTACTTCAGAAATGCTTCTGCAGAGCTGGACGATGAAAATGTGTGCATAG
Seq A exon
ACTGTTATTGTAACCCTTTTGGTTCAGTCCATGATCGCTGTAATGACAGAGGATTTTGTGAGTGTAAGGAGGGAGCATCAGGGCCTAAATGTGATAAATGTCTGCCGGGATATATCTGGCACAGCTTGGGCTGTCAAC
Seq C2 exon
CAAATGTGTGTGACAATGAACTCCTGCACTGCCAGAATGGAGGGACATGCATCAACAATGTGCGGTGCCAGTGCCCTCCGGCCTACACTGGCATCTTATGCGAGAAGCTTAAGTGTGAAAGGGATCCAGGAGGCTGCAGCCAAAGCTCCGCCCAGGGGGCAATGTCACACTGTCCCTTATTACTGCTGATGGCCCTACTAGGAGCAGCTGGGGTTCACATGTGCTAGGCTTCGTATGGTCAACGGCATCGTATTTGGACTGCTTCAAAATAACGTGCCACACGAAAAGAAAACAAAATCCAAGCATTTGCTACCGAAATTTCAAAAAGGAAAAAGAGAGAAAAAAATACCACATACAAACTAGGAAGGCCTAACTGAACTAAGCCATATTAATCAGTTACGGACAGCGCTCTGAGTCAAGACTGCTCACCACAACCGGAGATGGGCTGGCAGCTCCTGCTCTGCCCAACCAGTGCCGTCTGCCAGGCTCACATAGGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001896_MULTIEX1-7/7=6-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.7)
A:
PF0005319=Laminin_EGF=PU(91.8=95.7),PF079748=EGF_2=PU(5.6=4.3)
C2:
PF0005319=Laminin_EGF=PD(6.1=3.9),PF079748=EGF_2=PD(91.7=43.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGCAGAGCTGGACGATG
R:
AACCCCAGCTGCTCCTAGTAG
Band lengths:
251-389
Functional annotations
There are 0 annotated functions for this event