GgaEX0028955 @ galGal3
Exon Skipping
Gene
ENSGALG00000001896 | NTNG1
Description
NA
Coordinates
chr8:918246-964306:+
Coord C1 exon
chr8:918246-918272
Coord A exon
chr8:923698-923785
Coord C2 exon
chr8:963654-964306
Length
88 bp
Sequences
Splice sites
3' ss Seq
CATTTAAATTCTTCCAACAGTTG
3' ss Score
8.05
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTATACCCAGTATTTCCAGTATTGGTA
Seq A exon
TTGTAAAAGATGTTATGGCTGAGGAGGTGCCATAAAAACAACCACATCTTCACATTTATGCAGAATTCTCCTTCCTTCAAAGGAACAG
Seq C2 exon
CAAATGTGTGTGACAATGAACTCCTGCACTGCCAGAATGGAGGGACATGCATCAACAATGTGCGGTGCCAGTGCCCTCCGGCCTACACTGGCATCTTATGCGAGAAGCTTAAGTGTGAAAGGGATCCAGGAGGCTGCAGCCAAAGCTCCGCCCAGGGGGCAATGTCACACTGTCCCTTATTACTGCTGATGGCCCTACTAGGAGCAGCTGGGGTTCACATGTGCTAGGCTTCGTATGGTCAACGGCATCGTATTTGGACTGCTTCAAAATAACGTGCCACACGAAAAGAAAACAAAATCCAAGCATTTGCTACCGAAATTTCAAAAAGGAAAAAGAGAGAAAAAAATACCACATACAAACTAGGAAGGCCTAACTGAACTAAGCCATATTAATCAGTTACGGACAGCGCTCTGAGTCAAGACTGCTCACCACAACCGGAGATGGGCTGGCAGCTCCTGCTCTGCCCAACCAGTGCCGTCTGCCAGGCTCACATAGGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001896_MULTIEX1-3/7=2-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005319=Laminin_EGF=PD(6.1=3.9),PF079748=EGF_2=PD(91.7=43.4)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATACCCAGTATTTCCAGTATTGGT
R:
GCTGCAGCCTCCTGGATCC
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event