MmuEX0032534 @ mm9
Exon Skipping
Gene
ENSMUSG00000059857 | Ntng1
Description
netrin G1 [Source:MGI Symbol;Acc:MGI:1934028]
Coordinates
chr3:109585600-109635553:-
Coord C1 exon
chr3:109635386-109635553
Coord A exon
chr3:109630545-109630679
Coord C2 exon
chr3:109585600-109585829
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTGTTGTCTTGTTTCTACAGAGT
3' ss Score
10.07
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
ACTGTGAATGCTTCGGCCACTCCAATCGGTGCAGTTATATCGATCTGCTAAACACAGTCATTTGCGTGAGCTGTAAACACAACACTAGAGGGCAGCACTGTGAGTTATGCAGGCTGGGCTACTTCAGAAATGCTTCTGCACAGCTGGACGATGAGAATGTGTGCATAG
Seq A exon
AGTGTTATTGTAACCCTTTGGGCTCAATCCATGATCGTTGTAATGGCTCAGGATTTTGTGAGTGTAAGACTGGAACAACAGGGCCTAAATGTGATGAGTGTCTGCCAGGAAATTCCTGGTACTACGGCTGTCAAC
Seq C2 exon
CTAATGTCTGCGACAATGAGCTCCTGCACTGCCAGAATGGAGGGACCTGCCAGAACAATGTGCGCTGCGCGTGCCCAGACGCCTACACCGGCATCCTCTGTGAGAAGCTACGGTGCGAAGAGGCGGGCAGCTGTGGCTCCGAATCCGGCCAGGGAGCACCCCCGCGGGGCTCCCCAGCACTGCTGCTGCTGACCATGCTGCTGGGGACTGCCGGTCCCCTGGTGTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059857_MULTIEX1-6/6=5-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.7)
A:
PF0005319=Laminin_EGF=PU(91.7=95.7),PF079748=EGF_2=PU(5.6=4.3)
C2:
PF0005319=Laminin_EGF=PD(6.2=3.9),PF079748=EGF_2=PD(91.7=42.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTCCAATCGGTGCAGTTA
R:
TCACAGAGGATGCCGGTGTAG
Band lengths:
255-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types