DreEX0051909 @ danRer10
Exon Skipping
Gene
ENSDARG00000014973 | ntng1a
Description
netrin g1a [Source:ZFIN;Acc:ZDB-GENE-091118-13]
Coordinates
chr24:29523134-29538493:+
Coord C1 exon
chr24:29523134-29523234
Coord A exon
chr24:29528267-29528401
Coord C2 exon
chr24:29536922-29538493
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTCTTGTTTCTACAGACT
3' ss Score
10.58
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAGCTGTAAGCACAACACTAGAGGGCAGCACTGCCATCTGTGCAAGCTTGGATACTACCGCAATGCCACAGCAAAGCCGGACGATGAGAATATTTGCATAG
Seq A exon
ACTGTAATTGTAATCCCTTTGGCTCTGAGTCTGATCGCTGTAATGGCACAGGATATTGTAGATGTAAGGAGGGAGCGACAGGGGCTATGTGCCATGAGTGTCTGCCAGGATATTTGTGGGACAATGGCTGCAAAT
Seq C2 exon
CCCGGGTGTGCGACAGCGAACTTCTGCGTTGCCAAAATGGCGGCGTGTGTGTGAACTACGTCCGTTGTCAGTGTCCTCCGGCGTACACCGGCCTGCTGTGTGAGAAACCGCGCTGTGAGAAAGAGCCGGGCGGCTGCGGAGGGTCAGACTCGGGCCAGGCCTCCCTCCACCCCCCTTCCCTGATCCTGCTTTTGCTGCTGGGTGGCGTTTTCCTGACGGAGATCTGCTGGATCACAGTCCTCTGAGATGCAGATCTCCGACTCTTCAGCTTCTTCTGTATGAGCAGCGCACCAGACCCACCGACACTCGGCCGGCCATGTGGAATGTGCCCAAATATCAAAGCGAAAATCCAGAGGATGACAATAAATAAATAAATACATCAATAAAAATAGTATTTATAAATATTGATTCAATATAGAAATTTAAAAGCTAAAAAAAAAAAAAATCAAGGTGTTATTTATAGAATTTATCTGAGCATATGCTTTATGGAGCAAATAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014973-'15-12,'15-11,16-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0005319=Laminin_EGF=PU(89.6=95.6)
C2:
PF0005319=Laminin_EGF=PD(6.2=3.7),PF0000822=EGF=WD(100=36.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACTACCGCAATGCCACAGC
R:
AGCAGCAAAAGCAGGATCAGG
Band lengths:
249-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]