DreEX0052712 @ danRer10
Exon Skipping
Gene
ENSDARG00000004634 | osbp
Description
oxysterol binding protein [Source:ZFIN;Acc:ZDB-GENE-090312-18]
Coordinates
chr1:52055854-52059988:+
Coord C1 exon
chr1:52055854-52055892
Coord A exon
chr1:52058783-52058821
Coord C2 exon
chr1:52059959-52059988
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCAACTGTGTTTTTCTGCAGCTG
3' ss Score
10.36
5' ss Seq
CAAGCAAGT
5' ss Score
2.32
Exon sequences
Seq C1 exon
CCGACACAGACGAAACCTCCTCTGATCTTTCACTCTCAA
Seq A exon
CTGAAACACTGCATGGCTCACACCCACCCTCATACTCAA
Seq C2 exon
TGGAGGGTCCGTATGGAGCTCCGGTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004634-'24-23,'24-22,25-23
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(3.1=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(2.6=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSDART00000031301fB4431
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACACAGACGAAACCTCCTC
R:
TTTTGACCGGAGCTCCATACG
Band lengths:
68-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]