DreEX0052713 @ danRer10
Exon Skipping
Gene
ENSDARG00000004634 | osbp
Description
oxysterol binding protein [Source:ZFIN;Acc:ZDB-GENE-090312-18]
Coordinates
chr1:52053407-52064325:+
Coord C1 exon
chr1:52053407-52053654
Coord A exon
chr1:52053753-52053791
Coord C2 exon
chr1:52064183-52064325
Length
39 bp
Sequences
Splice sites
3' ss Seq
ATCTCTGTCTTTCCCTCAAGCTC
3' ss Score
8.99
5' ss Seq
AAAGCAAGT
5' ss Score
1.97
Exon sequences
Seq C1 exon
GGAGGGCGCTGAAAACATGTACTACTTCTCAACGCTGGCGCTGACGCTAAATGAGCCGGAGGAAGGCGTCGCTCCCACGGACAGCAGAAAGCGGCCGGATCAGCGTCTGATGGAGCAGGGCCGCTGGGAGGAGGCCAACGCTGAGAAACAGAGGCTGGAGGAAAAACAGCGCACGGCCCGAAGAGAGCGAGAGCGAGAGGCCAACCGCTCCGCCAACCCTGAGGAGGGTAAGGAGCCAGCGGACGGCG
Seq A exon
CTCTCATTGAGGACTCCATATCTGACTCGCCTCTGAAAA
Seq C2 exon
GCGGACACCAGGACAGCTATAAGGCGATGTGGTTCGATCGGTGTGTGGATCCGATGACCGGAGAGCCCACGCACATCTACAGAGGAGGATACTGGGAGACAAAAGAGCAGGGAAACTGGGACTCCTGCCCAGATATCTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004634_MULTIEX1-1/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=1.000 C2=0.530
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(20.5=100)
A:
PF0123713=Oxysterol_BP=FE(3.3=100)
C2:
PF0123713=Oxysterol_BP=PD(8.2=68.8)
Main Inclusion Isoform:
ENSDART00000141530fB4430
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAGGGTAAGGAGCCAG
R:
TCCTCTGTAGATGTGCGTGGG
Band lengths:
116-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]