DreEX0052714 @ danRer10
Exon Skipping
Gene
ENSDARG00000004634 | osbp
Description
oxysterol binding protein [Source:ZFIN;Acc:ZDB-GENE-090312-18]
Coordinates
chr1:52053407-52064325:+
Coord C1 exon
chr1:52053407-52053654
Coord A exon
chr1:52055711-52055758
Coord C2 exon
chr1:52064183-52064325
Length
48 bp
Sequences
Splice sites
3' ss Seq
CGTCTCTGCACTCTGATCAGCTG
3' ss Score
5.46
5' ss Seq
AAAGCAAGT
5' ss Score
1.97
Exon sequences
Seq C1 exon
GGAGGGCGCTGAAAACATGTACTACTTCTCAACGCTGGCGCTGACGCTAAATGAGCCGGAGGAAGGCGTCGCTCCCACGGACAGCAGAAAGCGGCCGGATCAGCGTCTGATGGAGCAGGGCCGCTGGGAGGAGGCCAACGCTGAGAAACAGAGGCTGGAGGAAAAACAGCGCACGGCCCGAAGAGAGCGAGAGCGAGAGGCCAACCGCTCCGCCAACCCTGAGGAGGGTAAGGAGCCAGCGGACGGCG
Seq A exon
CTGAAGAAGTCGAGATTGCCACTGAGCCTTCTGAGACCACTGACAAAA
Seq C2 exon
GCGGACACCAGGACAGCTATAAGGCGATGTGGTTCGATCGGTGTGTGGATCCGATGACCGGAGAGCCCACGCACATCTACAGAGGAGGATACTGGGAGACAAAAGAGCAGGGAAACTGGGACTCCTGCCCAGATATCTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004634_MULTIEX1-2/4=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=1.000 C2=0.530
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(20.5=100)
A:
PF0123713=Oxysterol_BP=FE(4.0=100)
C2:
PF0123713=Oxysterol_BP=PD(8.2=68.8)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAGGGTAAGGAGCCAG
R:
TCCCTGCTCTTTTGTCTCCCA
Band lengths:
143-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]