DreEX0053125 @ danRer10
Exon Skipping
Gene
ENSDARG00000059259 | pabpc4
Description
poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663]
Coordinates
chr17:25297796-25298418:-
Coord C1 exon
chr17:25298279-25298418
Coord A exon
chr17:25298112-25298206
Coord C2 exon
chr17:25297796-25297933
Length
95 bp
Sequences
Splice sites
3' ss Seq
AATTTGGTGTCTACCTGCAGGTA
3' ss Score
9.29
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTTTGTGGGCCGTTTCAAGTCCAGGAAGGAGAGAGAGGCAGAAATGGGTGCCAAAGCCAAAGAGTTCACTAATGTTTACATCAAGAACTTTGGCGATGACATGGATGATCAGAGACTGAAGGAGCTCTTTGATAAATATG
Seq A exon
GTAAAACACTGAGCGTGAAGGTCATGACTGACCCCACAGGGAAATCTCGGGGATTTGGTTTTGTTAGCTACGAGAAGCATGAAGATGCTAACAAG
Seq C2 exon
GCGGTGGAAGAGATGAATGGTACTGAGCTCAATGGTAAGACGGTGTTTGTTGGCCGAGCACAAAAAAAAATGGAGCGACAAGCAGAACTCAAGAGGAAGTTTGAACAGCTTAAACAGGAAAGAATCAGCAGATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059259-'4-6,'4-4,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.152
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(1.4=2.1),PF0007617=RRM_1=PU(31.4=45.8)
A:
PF0007617=RRM_1=FE(44.3=100)
C2:
PF0007617=RRM_1=PD(21.4=32.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGGCAGAAATGGGTGC
R:
TTTTGTGCTCGGCCAACAAAC
Band lengths:
175-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]