GgaEX0005066 @ galGal4
Exon Skipping
Gene
ENSGALG00000003800 | PABPC4
Description
poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:HGNC:8557]
Coordinates
chr23:5424071-5425299:-
Coord C1 exon
chr23:5425160-5425299
Coord A exon
chr23:5424793-5424887
Coord C2 exon
chr23:5424071-5424208
Length
95 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTCCCTTGGTAACAGGTA
3' ss Score
8.15
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATTTGTTGGGAGATTCAAGTCTCGTAAAGAGCGGGAGGCTGAGCTGGGAGCCAAGGCAAAGGAATTCACCAACGTTTATATTAAGAACTTTGGGGATGACATGGATGATGAAAGACTAAAGGAACTCTTCAGTAAATATG
Seq A exon
GTAAGACTCTGAGTGTTAAAGTGATGACAGACCCCACTGGAAAATCCAAAGGCTTTGGCTTTGTAAGCTTTGAAAAGCATGAAGATGCTAACAAG
Seq C2 exon
GCAGTAGAAGAAATGAATGGGAAGGATATCAATGGGAAAATGGTGTTTGTAGGCCGAGCACAGAAGAAGGTGGAGCGCCAGGCAGAGCTGAAAAGGAGATTTGAACAGTTAAAACAAGAGAGAATCAGCCGGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003800_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.130
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(1.4=2.1),PF0007617=RRM_1=PU(31.9=45.8)
A:
PF0007617=RRM_1=FE(44.9=100)
C2:
PF0007617=RRM_1=PD(20.3=30.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCCAAGGCAAAGGAATT
R:
GCTCCACCTTCTTCTGTGCTC
Band lengths:
171-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]