GgaEX0005066 @ galGal3
Exon Skipping
Gene
ENSGALG00000003800 | PABPC4
Description
NA
Coordinates
chr23:5736333-5737561:-
Coord C1 exon
chr23:5737422-5737561
Coord A exon
chr23:5737055-5737149
Coord C2 exon
chr23:5736333-5736470
Length
95 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTCCCTTGGTAACAGGTA
3' ss Score
8.15
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATTTGTTGGGAGATTCAAGTCTCGTAAAGAGCGGGAGGCTGAGCTGGGAGCCAAGGCAAAGGAATTCACCAACGTTTATATTAAGAACTTTGGGGATGACATGGATGATGAAAGACTAAAGGAACTCTTCAGTAAATATG
Seq A exon
GTAAGACTCTGAGTGTTAAAGTGATGACAGACCCCACTGGAAAATCCAAAGGCTTTGGCTTTGTAAGCTTTGAAAAGCATGAAGATGCTAACAAG
Seq C2 exon
GCAGTAGAAGAAATGAATGGGAAGGATATCAATGGGAAAATGGTGTTTGTAGGCCGAGCACAGAAGAAGGTGGAGCGCCAGGCAGAGCTGAAAAGGAGATTTGAACAGTTAAAACAAGAGAGAATCAGCCGGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003800_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.130
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(1.4=2.1),PF0007617=RRM_1=PU(31.9=45.8)
A:
PF0007617=RRM_1=FE(44.9=100)
C2:
PF0007617=RRM_1=PD(20.3=30.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCCAAGGCAAAGGAATT
R:
GCTCCACCTTCTTCTGTGCTC
Band lengths:
171-266
Functional annotations
There are 0 annotated functions for this event