DreEX0055921 @ danRer10
Exon Skipping
Gene
ENSDARG00000045331 | pkp4
Description
plakophilin 4 [Source:ZFIN;Acc:ZDB-GENE-120411-14]
Coordinates
chr6:11994639-11997915:-
Coord C1 exon
chr6:11997705-11997915
Coord A exon
chr6:11994871-11995015
Coord C2 exon
chr6:11994639-11994771
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGGGCATATTTATTCTTCAGGCA
3' ss Score
6.19
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGTTTGGTACTTTACAAAGGACCACGAGTCAGTGTAGCACTCTGAGGTACCAGCGAGGGTTATTCTCTATGGGCTCCATGGCAACGCACTCTGACACCTATCGTCCTGGACATTATCGCCAAGCCGATTCGAACTACTCCAGACACTCAGCTGCCCTTGACAACGCCGTCACTCGCTCGCCTTCCATAGACAGTGTTCACAAAGATCCCAG
Seq A exon
GCAGAAGAGCTTGAGAGAAAATGTAAACCAGTTCGCCTGAGCGCTTATTCAGATTTGCATTGCATATATTCATGACAAACACAAGCTGGACTGATTTTTGTGTTTGGATATTTGTCCTGGTGCAAACATGTAAACAGTAATAATT
Seq C2 exon
GGAGTTCGCCTGGAGAGATCCTGAGCTGCCGGAGGTGATCCGGATGCTGCAGCATCATTTCCCTTCTGTTCAGGCCAATGCTGCAGCGTACATACAGCACCTCTGCTATGGAGACAACCGCATAAAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045331-'15-10,'15-9,16-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=1.000 C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0051418=Arm=PU(14.6=13.3)
Main Inclusion Isoform:
ENSDART00000155685fB4699
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGTACCAGCGAGGGTTA
R:
AGCATTGGCCTGAACAGAAGG
Band lengths:
252-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]