BtaEX6009670 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013773 | PKP4
Description
Bos taurus plakophilin 4 (PKP4), mRNA. [Source:RefSeq mRNA;Acc:NM_001191491]
Coordinates
chr2:37868556-37880573:-
Coord C1 exon
chr2:37880383-37880573
Coord A exon
chr2:37877153-37877705
Coord C2 exon
chr2:37868556-37868744
Length
553 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCCCCTTCCATCAGCCA
3' ss Score
8.14
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GATCTTTGGGTAACTCAAGAAGTTCAACACAAATGAATTCTTATTCCGACAGTGGATACCAGGAAGCAGGGAGTTTCCACAACAGCCAGAACTTGAGTAAAGCAGATAACAGACCACAGCATTCATTCGTAGGATCAACTAATAACCACCTGGTGAGGAATTCAAGAGCTGAAGGGCAAACACTGGTTCAG
Seq A exon
CCATCAGTGGCCAATCGGGCCATGAGAAGAGTTAGTTCAGTTCCATCTAGAGCACAGTCTCCTTCCTATGTTATCAGCACAGGCGTGTCTCCTTCAAGGGGGTCACTGAGAACTTCTCTGGGTAGTGGATTTGGCTCTCCCTCTGTAACCGACTCCCGACCACTGAACCCCAGTGCATACTCCTCCACCACATTACCTGCTCAGCGGGCAGCTTCTCCATACTCTGCACAGAGACCCGCCTCCCCATCAGCTGTACGTCGGATTGGGTCGGTCACCTCCCGGCAGACCTCCAATCCCAACGGACCAACCCCTCAGTACCAGACCACCACCAGAGTGGGGTCCCCACTGACGCTGACGGATGCACAGACTCGAGTAGCTTCCCCATCCCAAGGCCAGGTGGGGTCATCGTCCCCCAAACGCTCAGGGATGACTGCCGTACCACAGCATCTGGGACCTTCACTGCAAAGGACTGTTCACGACATGGAACAATTCGGACAGCAGCAGTATGAAATCTACGAGAGGATGGTTCCACCTCGGCCAGACAGCCTGACAG
Seq C2 exon
GCTTACGGAGTTCCTATGCTAGTCAGCACAGCCAACTTGGACAAGACCTTCGTTCAGCTGTGTCTCCCGACTTGCACATCACTCCTATATATGAGGGGAGGACCTATTATAGCCCAGTGTACCGCAGCCCAAACCACGGAACCGTGGAGCTCCAGGGATCACAGACAGCGCTGTACCGCACAGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013773-'14-24,'14-21,16-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.734
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000018330fB5276
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTAACTCAAGAAGTTCAACACA
R:
TGTCTGTGATCCCTGGAGCTC
Band lengths:
352-905
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]