GgaEX6043373 @ galGal3
Exon Skipping
Gene
ENSGALG00000012561 | PKP4
Description
NA
Coordinates
chr7:38045532-38048816:+
Coord C1 exon
chr7:38045532-38045722
Coord A exon
chr7:38046479-38047037
Coord C2 exon
chr7:38048625-38048816
Length
559 bp
Sequences
Splice sites
3' ss Seq
TTGATTTTGTTTTTAAACAGCCT
3' ss Score
7.84
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGTCTGTAGGTAACTCAAGAAGTTCAACACAAATGAATTCTTATTCTGATAGCGGTTACCAGGAAGTAAGCAGCTTCCATAACAGCCAAAACTTGAACAAACCAGAAAGCAGACAGCAGCATTCCCGTATTGGAACTGCTACTAACCACTTGGTGAGAAGCTCACGAGCTGAAGGGCAGACTCTAGTCCAG
Seq A exon
CCTTCAGCAAACGTTGCTACCAACCGAGCCATGAGGCGCGTCAGTTCGGTCCCGTCCAGAGCACAGTCTCCCTCTTATGTGGTCAGCACAGGTGTTTCCCCTTCCAGGGGGTCTCTGCGAACATCTCTGGGTAGCGGGTATGGTTCTCCATCAGTTGCTGAGCAAAGATCCCTTGCTTCTCATGCCTATTCATCCACTACTCTGCCAGTACAGCGGGCGGCATCCCCGTATGCTGCACAGAGACCTGCTTCCCCAGTGACTGTGCGGCGGATTGGCTCGATCACATCCAGACAGACAGCAAATCCCAACGGTGGGACTTCCCAGTACCAAGCATCAGCCAGAGTTGGCTCTCCTCTTGCCCTCACTGATGTACAAACCAGAGTTGTTTCTCCACCCCAAACCCAACTGGGATCATCTTCCCCAAAGCGTTCTGGTATGACTGCGGTTCCGCAGCACTTGGGAACAACACTGCAGAGAACAGTTCATGATATTGAACAGTACGGACAGCAATATGATATATATGAAAGAATGGTTCCTCCACGTCCAGATAGCCTTACAG
Seq C2 exon
GCCTGAGGAGTTCGTATGCTAGTCAACACAGTCAACTAGGACAGGAATTACGATCAGCTGTATCTCCTGACTTGCACATCACCCCTATCTATGAAGGCAGAACTTACTACAGTCCTGTGTACCGTAGCCCAAATCATGGAACGATTGAGCTCCACCAGGGGTCCCAGTCAGCACTATATCGAACAGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012561-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.955 C2=0.715
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAACTCAAGAAGTTCAACACAA
R:
CCTGGTGGAGCTCAATCGTTC
Band lengths:
342-901
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]