MmuEX6101439 @ mm10
Exon Skipping
Gene
ENSMUSG00000026991 | Pkp4
Description
plakophilin 4 [Source:MGI Symbol;Acc:MGI:109281]
Coordinates
chr2:59305305-59310290:+
Coord C1 exon
chr2:59305305-59305492
Coord A exon
chr2:59308008-59308557
Coord C2 exon
chr2:59310102-59310290
Length
550 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCCCCTCTCATCAGCCA
3' ss Score
8.31
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GATCGTTGGGAAACTCAAGAAGTTCAACACAGATGAATTCTTACTCTGACAGTGGGTACCAGGAAGCAGGGAGTTTCCACAACAGCCAAACCGTGAACAAGGCAGACAGCAGACAGCATCCATTCACAGGATCAACAAGTAACCATGTGGTGAGGACTTCAAGAGCTGAAGGACAAACACTGGTTCAG
Seq A exon
CCATCAGTAGCCAATCGGGCCATGCGGAGAGTTAGTTCAGTTCCATCTAGAGCACAGTCTCCTTCTTATGTTACCAGCACAGGCGTGTCTCCTTCAAGGGGGTCACTGAGAACTTCTCTGGGTAGTGGATTTGGCTCTCCATCAGTGACGGACTCCCGACCTCTGAACCCCAGTGCTTACTCCTCCAGCACGCTCCCTGCACAGCGGGCCGCCTCTCCATACTCACAGAGACCCGCCTCCCCAACAGCCGTGCGCCGGGTCGGGTCTGTCACCTCCCGGCAGACCTCCAATCCCAACGGACCAGTCCCTCAGTACCAGACCACCACCAGGGTGGGGTCCCCACTGACCCTGACTGATGCCCAGACTCGAGTAGCTTCCCCATCCCAAGGCCAGGTGGGGTCATCGTCCCCGAAACGCTCTGGGATGACCGCCGTACCACAGCACCTGGGACCTTCACTGCAAAGGACTGTTCATGACATGGACCAATTTGGACAGCAGCAGTATGACATTTATGAAAGGATGGTTCCACCTCGGCCAGACAGCCTGACAG
Seq C2 exon
GCTTACGGAGTTCCTATGCCAGTCAGCATAGTCAGCTTGGGCAAGAGCTCCGTTCAGCTGTGTCTCCTGACTTGCACATCACTCCTATCTATGAAGGGAGGACCTACTACAGTCCAGTGTACCGCAGCCCAAACCACGGGACCGTGGAGCTCCAGGGGTCACAGACAGCATTGTATCGCACAGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026991-'24-37,'24-28,27-37
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.996 C2=0.656
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000037903fB3030
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTCTTACTCTGACAGTGGGT
R:
GAGCCTGTGCGATACAATGCT
Band lengths:
342-892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types