RnoEX0066482 @ rn6
Exon Skipping
Gene
ENSRNOG00000005504 | Pkp4
Description
plakophilin 4 [Source:RGD Symbol;Acc:1307840]
Coordinates
chr3:45365817-45372679:+
Coord C1 exon
chr3:45365817-45366004
Coord A exon
chr3:45368656-45369017
Coord C2 exon
chr3:45372491-45372679
Length
362 bp
Sequences
Splice sites
3' ss Seq
CCCAGTACTTACTCCTCCAGCAC
3' ss Score
4.79
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GATCGTTGGGAAACTCAAGAAGTTCAACACAGATGAATTCTTACTCTGACAGTGGATACCAGGAAGCAGGGAGTTTCCACAACAGCCAGACCGTGAACAAGGCAGACAGTAGACAGCATCCATTCACGGGATCAACAAGCAACCATGTGGTGAGGAATTCGAGAGCAGAAGGACAAACACTGGTTCAG
Seq A exon
CACGCTCCCTGCTCAGCGGGCCGCCTCTCCGTACTCACAGAGACCCGCCTCCCCGACAGCCGTGCGCCGGGTCGGGTCCGTCACCTCCCGACAGACCTCCAATCCCAACGGACCAGTCCCTCAGTACCAGACCACCACCAGGGTGGGGTCCCCACTGACCCTGACTGATGCCCAGACTCGAGTAGCTTCCCCATCCCAAGGCCAAGTGGGGTCATCGTCCCCGAAACGCTCTGGGATGACCGCCGTACCACAGCATCTGGGACCTTCACTGCAAAGGACTGTTCATGACATGGACCAATTCGGACAGCAGCAGTATGATATTTACGAGAGGATGGTTCCACCACGGCCAGACAGCCTGACAG
Seq C2 exon
GCTTACGGAGTTCCTATGCCAGTCAGCATAGTCAGCTTGGACAAGATCTTCGTTCAGCTGTGTCTCCTGACTTGCACATCACTCCTATATATGAAGGGAGGACCTACTACAGTCCAGTGTACCGCAGCCCAAACCACGGGACCGTGGAACTCCAAGGATCACAGACAGCACTGTACCGCACAGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005504-'29-29,'29-28,30-29
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.680
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTTGGGAAACTCAAGAAGT
R:
GTGCTGTCTGTGATCCTTGGA
Band lengths:
357-719
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]