DreEX6020976 @ danRer10
Exon Skipping
Gene
ENSDARG00000045331 | pkp4
Description
plakophilin 4 [Source:ZFIN;Acc:ZDB-GENE-120411-14]
Coordinates
chr6:11998035-12015882:-
Coord C1 exon
chr6:12015686-12015882
Coord A exon
chr6:12010292-12010724
Coord C2 exon
chr6:11998035-11998193
Length
433 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGATGTGTTTCTCAGGTG
3' ss Score
9.92
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTCTGCTGCAAACTCGCGCAGCTCGACTCAGATGAATTCCTACTCAGATAGCGGATATCAGGAGGTGAGCGGTTACTACAGTAACACGGTGACGCCCAGGCGGTCTGAAGGGAGGTCACAGTCGACCAGCTCCGCCCCCAGCGGAAGCCCCACCCTCGCCATGAGCTCCAGGGCTGAAGGACAGGCCTCTGCACAG
Seq A exon
GTGGGCAGCAGTGGGCGTGTCATGAGGCGGGTCAGCTCTGTTCCCTCTCGTGCTCCATCTCCACTCTACACACCGTCTCCACCTGCGTCCCGCCAGCCTCTGCGTACTTCTCTCGGAAGCCCCTATGGTTCACCCATAGTCTCAGAGCCTCGTCCTCTACCTAGCATATTTCCTGGCACCACCTTGCCTCCTGCTTCCAGCCACGCTCCTGACCCGCTCCACTCCAGCTACCTAGGGCGGCATGGAAACGGGACGGGGTCTGAGTCTGGGTCACCAACACTCCTGCGAGCTGGAATGACTGCTCAGCCTCAGCAGTATGGGACCCTGGGAAAGCACGATACACGTGCATATGAGAGCACTCACTCTTCTTTTGGCTCTCGAGCCTATGACATCTTTGAGAGGATGGTTCTTTCAAGACCGGACAGCCTTACAG
Seq C2 exon
GCCTGCAAACCTCTTACAGTCAAAATAGCCAGTTAGGCCAGGACACACGCTCCCCTGACTGCCATGTCACGCCAATCTATGAAGACAGAACCTTCCAGAACCCTCTGTACCAGAGTCCAACGCACGGCTCCCAAAGCGCTGCCTCCAGAAACAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045331-'10-7,'10-5,13-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.862 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGCTGCAAACTCGCG
R:
TATTGTTTCTGGAGGCAGCGC
Band lengths:
353-786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]