DreEX0056312 @ danRer10
Exon Skipping
Gene
ENSDARG00000099954 | plekhm1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2752]
Coordinates
chr12:4917685-4919554:+
Coord C1 exon
chr12:4917685-4917830
Coord A exon
chr12:4918923-4919116
Coord C2 exon
chr12:4919491-4919554
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTGTCTGTCTGCCTGTTCAGGTC
3' ss Score
11
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GTTGCTCTCGTCAGATCGGTGTGTCTCTGGGCAGAGGCAGACTGTGTGAGTTCTCCGGTCAGCAGTTCTGTGATTCCTGCCATCAAGGAGACATGAGCATCATCCCCTCCCGCATGCTGCACAACTGGGACCTGAAAACTCGCGAG
Seq A exon
GTCTCAAGACAAGCCTTTAAGCTGCTGACTCAAATTGAGCACGAGCCGCTCCTGAACCTTGCTGTTCTGAATCCTGAGCTGTTTGAACATGCTGACATCATGGCTAAAGTGCAGAACCTCCGACAGAGACTTCGCTTTCTAGGAGATTACGTTCTCCTCTGCCGCAGTGGCTTTAGCAAACAGATCCAGCCCAG
Seq C2 exon
ACTTCAGCAGAGGACATACTTGTTGGATAACAGTGACGTCTACAGTGTGTTAGACTTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099954_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=PU(17.2=71.4)
A:
PF139011=DUF4206=FE(31.4=100)
C2:
PF139011=DUF4206=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTCTCGTCAGATCGGTG
R:
CTGCTGCAAGTCTAACACACTG
Band lengths:
210-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]