RnoEX0067109 @ rn6
Exon Skipping
Gene
ENSRNOG00000028521 | Plekhm1
Description
pleckstrin homology and RUN domain containing M1 [Source:RGD Symbol;Acc:1308010]
Coordinates
chr10:91455832-91462288:-
Coord C1 exon
chr10:91462143-91462288
Coord A exon
chr10:91458995-91459188
Coord C2 exon
chr10:91455832-91455895
Length
194 bp
Sequences
Splice sites
3' ss Seq
GTCTTCATGAATTTTCTCAGGTC
3' ss Score
6.83
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTTGCTCCCGGCAGATCGGCTTCTCCTTTGTACGACCTAAGCTCTGTGCCTTCTCTGGCCTATATTACTGTGACTTCTGCCACCAAGACGATGCCTCGGTGATTCCAGCCAGAATCATTCATAACTGGGACCTCACAAAGCGCCCG
Seq A exon
GTCTGCCGGCAGGCCCTGAAGTTCCTGGCCCAGATCCGGGCCCAGCCCCTCATCAACCTGCAGCTGGTGAACGCCTCTCTGTATGAGCATGTAGAGCGCATGCACCTCATTGGCAGGAGCCGGGAGCAGCTGAAACTTCTGGGGGACTACCTGGGCCTGTGCCGAAGTGGTGCTCTGAAGGAGTTGAGCAAAAG
Seq C2 exon
GCTAAGCCACAGGAATTACCTCTTGGAGTCTCCTCACAAATTCAGTGTTGCTGACCTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028521_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=PU(17.1=71.4)
A:
PF139011=DUF4206=FE(31.2=100)
C2:
PF139011=DUF4206=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATCGGCTTCTCCTTTGT
R:
AGCAACACTGAATTTGTGAGGAGA
Band lengths:
188-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]