GgaEX1044499 @ galGal4
Exon Skipping
Gene
ENSGALG00000000201 | PLEKHM1
Description
pleckstrin homology domain-containing family M member 1 [Source:RefSeq peptide;Acc:NP_001026095]
Coordinates
chr27:1589115-1590591:-
Coord C1 exon
chr27:1590446-1590591
Coord A exon
chr27:1590176-1590369
Coord C2 exon
chr27:1589115-1589178
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCGCCCTCTCTCTGCCCTAGGTT
3' ss Score
11.16
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GCTGCTCCAGGCAGATCGGCTTCTCCTTCGCCAAACCCAAACTCTGTGCCTACTCCGGGCTCTACTACTGCGACAGCTGCCACCGGGACGACGAGACGGTCATCCCCTCACGCCTCATCCACAACTGGGACCTGAGCAAGAGAGGG
Seq A exon
GTTTGCCGTCAGGCGCTGAAGTTCCTCACCCAGATCTGTAAGCAGCCACTGATTGATCTCAAGTTGGTCAACGAGAGCCTCTATGACCACGTGGAGAGGATGAGGCGCATCCGCCGGAGCCGGGAGCAGCTGAAGCTGCTGGGGGATTACCTGAGTGTGTGCCGCAGCGGGGCCCTGAAGGAGCTGAGCAAGCG
Seq C2 exon
CCTCGATCACAGGAACTACCTCCTGGAGTGTCCCCACAAGTACAGCGTGGCCGACCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000201_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=PU(17.2=71.4)
A:
PF139011=DUF4206=FE(31.4=100)
C2:
PF139011=DUF4206=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATCGGCTTCTCCTTCG
R:
CAGGTCGGCCACGCTGTA
Band lengths:
194-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]