DreEX0059250 @ danRer10
Exon Skipping
Gene
ENSDARG00000004539 | ptgs2a
Description
prostaglandin-endoperoxide synthase 2a [Source:ZFIN;Acc:ZDB-GENE-020530-2]
Coordinates
chr2:21258435-21262035:-
Coord C1 exon
chr2:21261749-21262035
Coord A exon
chr2:21261109-21261256
Coord C2 exon
chr2:21258435-21259108
Length
148 bp
Sequences
Splice sites
3' ss Seq
AAATTTTTGTGTGTGAACAGGTG
3' ss Score
8.38
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGAGACCATCAAAATTGTGATCGAGGACTATGTTCAGCACTTGAGTGGATACAACTTCAAGCTCAAGTTTGACCCAGAGCTCATCTTCAGTGAGCGTTTCCAGTACCAGAACCGTATTGCGGCCGAATTCAATACCCTGTATCACTGGCATCCACTGTTGCCGGACAACTTTCAGATCCAGGATCAGATCTACGGCTATCACCAGTTTGTGTTTAACAACTCTATCGTCACCACACATGGCATTCGCAACATGGTGGACTCCTTCACCAAACAGACTGCTGGACGG
Seq A exon
GTGTCTGGTGGACGTAACCTGCCACCTGCAGTTCAAGGAGTCGCTGTTAAAGTTCTGGAACAAACCAGACAGATGCGCTATCAATCTTTCAATGCATACAGAAGACGCTTCAACATGAAGCCCTACTCATCCTTTGAGGAGATGACAG
Seq C2 exon
GAGACAAAGATCTGGCTGCCCAGCTGAAGGAGCTGTACGGTCACGTAGACAAGGTTGAGCTGTATCCTGGCCTTCTTGTGGAGAAATCCAGACCCAACTCTGTGTTTGGGGAGACTATGGTGGAAATGGGAGCTCCCTACTCTCTCAAAGGCCTCATGGGAAATGCTATTTGTTCTCCTGAATACTGGAAGCCCAGCACATTTGGTGGGAAAGTGGGATTTGACATCGTTAACTCGGCTTCACTGAAGAAATTGGTGTGTTTGAACGTCAGTGGGCCCTGTCCGATGGTGTCCTTTCAGGTGCCAGATGTGAAATTTCAGAGTTCAGAAAACGTGAATTCAAGTTCAGTGCACTCCACAGTAAATAATATAAATCCAACTGTTGTTTTGAACGAGCGGAGTTCAGAGCTGTAAAAGGTCTCAAAATCTTCAAAATCCCAGATACTTGATATGGTTTTGTAATTTATTTATTTTTTATATATATTTATTTGAATAATTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004539-'11-9,'11-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.015
Domain overlap (PFAM):
C1:
PF0309810=An_peroxidase=FE(25.7=100)
A:
PF0309810=An_peroxidase=FE(13.3=100)
C2:
PF0309810=An_peroxidase=PD(27.1=72.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCGAATTCAATACCCTGT
R:
TTCTCCACAAGAAGGCCAGGA
Band lengths:
252-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]