RnoEX0071003 @ rn6
Exon Skipping
Gene
ENSRNOG00000002525 | Ptgs2
Description
prostaglandin-endoperoxide synthase 2 [Source:RGD Symbol;Acc:620349]
Coordinates
chr13:67355432-67359335:+
Coord C1 exon
chr13:67355432-67355718
Coord A exon
chr13:67356107-67356254
Coord C2 exon
chr13:67356511-67359335
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTATTATTCACCTTTCTCAGGTT
3' ss Score
8.7
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAGAGACGATCAAGATAGTGATCGAAGACTACGTGCAACACCTGAGCGGTTACCACTTCAAACTCAAGTTCGACCCAGAGCTGCTTTTCAACCAGCAGTTCCAGTATCAGAACCGCATTGCCTCTGAATTCAACACACTCTATCACTGGCATCCGCTGCTGCCGGACACCTTCAACATTGAAGACCAGGAGTACACTTTCAAACAGTTTCTCTACAACAACTCCATCCTCCTTGAACACGGACTTGCTCACTTTGTTGAGTCATTCACCAGACAGATTGCTGGCCGG
Seq A exon
GTTGCTGGGGGAAGGAATGTTCCAATCGCTGTACAAGCAGTGGCAAAGGCCTCCATTGACCAGAGCAGAGAGATGAAATACCAGTCTCTCAATGAGTACCGCAAACGCTTCTCCCTGAAACCTTACACATCGTTTGAAGAACTTACAG
Seq C2 exon
GAGAGAAAGAAATGGCTGCAGAGTTGAAAGCCCTCTACCATGACATCGATGCCATGGAACTGTATCCCGCCCTGCTGGTGGAAAAGCCTCGTCCAGATGCTATCTTTGGGGAGACCATGGTAGAACTTGGAGCTCCATTCTCCTTGAAAGGCCTTATGGGTAATCCCATCTGTTCTCCTCAATACTGGAAACCTAGCACCTTCGGAGGAGAAGTGGGTTTTAGGATCATCAACACTGCCTCAATTCAGTCTCTCATCTGCAATAATGTGAAAGGGTGTCCCTTTGCCTCTTTCAATGTGCAAGACCCGCAGCCTACCAAGACAGCCACCATCAACGCAAGTGCCTCCCACTCCAGACTAGATGACATTAACCCTACAGTACTAATCAAAAGGCGTTCAACTGAGCTGTAAGAGTCTACTGACCATATTTATTTATTTATATGAACAATTTAATTTAATTATTTAATATTTATACAGAATGCTTTTTTTCACTTAACATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002525-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.081
Domain overlap (PFAM):
C1:
PF0309810=An_peroxidase=FE(21.5=100)
A:
PF0309810=An_peroxidase=FE(11.1=100)
C2:
PF0309810=An_peroxidase=PD(22.4=72.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAGCTGCTTTTCAACCA
R:
GGCTTTCAACTCTGCAGCCAT
Band lengths:
246-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]