GgaEX6044007 @ galGal3
Exon Skipping
Gene
ENSGALG00000005069 | PGH2_CHICK
Description
NA
Coordinates
chr8:10064107-10067539:+
Coord C1 exon
chr8:10064107-10064393
Coord A exon
chr8:10064544-10064691
Coord C2 exon
chr8:10064847-10067539
Length
148 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTTTCTACTGATTAGGTT
3' ss Score
7.06
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GAGAAACGATCAAGATAGTTATTGAAGATTATGTGCAGCACTTAAGTGGCTACCATTTCAAATTGAAGTTTGACCCTGAGCTTCTGTTCAACCAGCGTTTTCAATACCAGAACCGAATCGCAGCTGAATTCAATACTCTGTACCACTGGCACCCCCTTCTGCCTGACACTTTTCAGATACATAACCAGGAGTACACATTCCAGCAGTTCCTCTACAACAACTCCATAATGCTGGAACATGGCCTTTCCCATATGGTGAAATCTTTTTCCAAGCAAAGTGCTGGTAGG
Seq A exon
GTTGCTGGTGGGAAAAATGTTCCAGCTGCAGTACAGAAAGTAGCAAAGGCTTCAATTGACCAAAGCAGACAAATGAGATACCAGTCTTTGAATGAGTACAGGAAACGCTTCATGTTGAAACCATTCAAATCATTTGAAGAACTTACAG
Seq C2 exon
GAGAAAAAGAAATGGCTGCTGAACTAGAAGAGCTTTATGGAGACATAGATGCTATGGAACTGTATCCAGGCCTTCTTGTAGAAAAGCCAAGACCAGGTGCCATCTTTGGTGAAACAATGGTAGAAATTGGCGCACCGTTCTCCCTGAAAGGACTGATGGGAAATACAATATGCTCCCCTGAGTACTGGAAGCCAAGCACTTTTGGTGGAAAAGTGGGGTTTGAAATAATCAATACTGCCTCCTTACAGAAGCTCATCTGCAACAATGTGAAAGGCTGTCCTTTCACTGCTTTCCATGTCTTAAATCCTGAACCCACAGAGGCAACTATTAATGTTAGTACCTCAAACACAGCAATGGAAGATATCAACCCCACACTACTACTGAAAGAGCAATCTGCTGAGTTGTAAATTAGCCACCTAATTTATTTATTTAAGTTATTCTATTTATAGCTCTAGTATTTAGAAAACAAAAAGCAACCTTTTACATCTTCACTTTGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005069-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
PF0309810=An_peroxidase=FE(26.1=100)
A:
PF0309810=An_peroxidase=FE(13.5=100)
C2:
PF0309810=An_peroxidase=PD(26.6=71.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCTGTACCACTGGCACCC
R:
GCACCTGGTCTTGGCTTTTCT
Band lengths:
254-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]