DreEX0059254 @ danRer10
Exon Skipping
Gene
ENSDARG00000010276 | ptgs2b
Description
prostaglandin-endoperoxide synthase 2b [Source:ZFIN;Acc:ZDB-GENE-041014-323]
Coordinates
chr20:34218939-34220958:-
Coord C1 exon
chr20:34220672-34220958
Coord A exon
chr20:34220406-34220553
Coord C2 exon
chr20:34218939-34220028
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTAAATCTCTTTGACTTCAGGTA
3' ss Score
7.97
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGAGACTATTAAGATCGTGATCGAAGATTACGTCCAGCACCTTAGTGGATACTATTTTAAGCTCAAGTTTGATCCCGAACTACTCTTCAATGAGCGTTTCCAATACCAGAACAGGATCTCCTCTGAGTTCAACACACTTTACCATTGGCACCCCCTCATGCCTGATGATTTTCACATCCAGGATGAAGTCTACAATTATCAGCAGTTTCTCTTCAACACTTCTATCCTGACAGATTATGGCGTCAACAGCTTGGTTGAGTCCTTCAACAAACAGATAGCCGGAAGG
Seq A exon
GTAGCTGGAGGGCGTAATGTAGCACCAGCAGTGTTAAGGGTGGCCATTAAGTCGATTGAAAACAGCAGGCAAATGCGCTACCAATCAATCAATGCTTACAGGAAACGCTTCAACATGAAGCCATACAGATCCTTTGAAGAAATGACAG
Seq C2 exon
GAGAAAAAGAAATGGCTGCTGAACTTGAAGAGATGTACGGAGATGTGGATGCTGTGGAGCTTTATGCTGGTTTGCTGGTTGAAAAGCCCAGGTCCAACGCCATCTTTGGGGAGACCATGGTTGAGATGGGTGCGCCCTACTCCCTTAAAGGACTTATGGGAAATCCCATCTGTTCCCCAGAGTACTGGAAACCAAGCACCTTTGGTGGGAAAGTGGGCTTTGAGATTGTGAACAGTGCCTCTCTGCAGAACTTGGTTTGCAATAATGTCAACGGGCCATGTCCTATGGCGTCCTTTTATGTGCCTAATGTAAAAGATTCATTACCCACCACTATTAATGCAAGTACGTCCCAGTCAGATCGAAATGTCAACCCAACTGTTTTACTAAAAGAAAGGACATCTGAGCTCTGATTAGTGTATTCTATTGTAAAAGTATTTGTTATTTATTTATTTATAGGATATTTATTTAATTTATAAATCATATTTTCTTACAGAAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010276-'7-9,'7-7,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.162
Domain overlap (PFAM):
C1:
PF0309810=An_peroxidase=FE(26.1=100)
A:
PF0309810=An_peroxidase=FE(13.5=100)
C2:
PF0309810=An_peroxidase=PD(26.9=71.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTACCATTGGCACCCCCTC
R:
TTGGACCTGGGCTTTTCAACC
Band lengths:
247-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]