DreEX0060024 @ danRer10
Exon Skipping
Gene
ENSDARG00000014101 | pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:ZFIN;Acc:ZDB-GENE-050506-147]
Coordinates
chr13:40161498-40167737:-
Coord C1 exon
chr13:40167583-40167737
Coord A exon
chr13:40165136-40165242
Coord C2 exon
chr13:40161498-40161618
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTTCTGTCTGGCAGTAT
3' ss Score
8.8
5' ss Seq
GGGGTATGA
5' ss Score
5.41
Exon sequences
Seq C1 exon
GCCCATGATAGAAATGACCATTCCCTCAGTGCTGGATCCCACTCTAGCGCCGCCTGGATGTCACGTGGTGTCACTTTTTATACAGTTTACACCATATTTGCTTGAGGGTCGCCGTGCTTGGACTGATGAGGATAAGGAGAGGTTTGGGGACACAG
Seq A exon
TATTCGACTGGGTTGAGCGTTACGCACCAGGATTTAAAGCCTCAATAGTAGGCAAAGACATCCTGACCCCTGCTGATCTGGAGAGGGTCTTTGGTCTCACCGGAGGG
Seq C2 exon
AATATTTTCCATGGCTCAATGTCGTTGGATCAGCTTTACCTGGCGAGGCCTTTGCCCTCTATCGCAGACTATCGCTCGCCCGTCAAAGGATTGTACTTATGTGGCAGTGGCAGCCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014101_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(18.6=100)
A:
PF0126619=DAO=FE(12.5=100)
C2:
PF0126619=DAO=FE(14.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTCCCTCAGTGCTGGAT
R:
GCTGCCACTGCCACATAAGTA
Band lengths:
253-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]