GgaEX1047485 @ galGal3
Exon Skipping
Gene
ENSGALG00000007014 | PYROXD2
Description
NA
Coordinates
chr6:23676659-23677217:+
Coord C1 exon
chr6:23676659-23676813
Coord A exon
chr6:23676903-23677009
Coord C2 exon
chr6:23677097-23677217
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATGTCTCCATTCCTCCATAGTGT
3' ss Score
8.64
5' ss Seq
GGGGTGGGT
5' ss Score
3.34
Exon sequences
Seq C1 exon
GCCCATGATTGAGCTGTGCATCCCCTCCGCGCTGGACCCGGGGCTGGCCCCTCCAGGCTGCCACGTTGTGTCCCTCTTTACCCAGTACACTCCGTATGAGCTGGCAGGTGGGCAGCCCTGGGACGAGAAGGCTCGGAATGCTTATGCAGACACAG
Seq A exon
TGTTCGACTGCATTGAAGCCTATGCCCCAGGCTTCAAGGTGTCTGTCATCGGCAGGGACATCCTGACACCACCTGACCTGGAGAGGATCTTTGGACTGCCCGGTGGG
Seq C2 exon
AACATCTTTCATGGAGGGATGTCTCTGGACCAGCTCTACTTCACCCGGCCAGCACCATCCTACTCGACCTACCAGTCTCCAGTCCCAGGCTTATACCTGTGCGGGAGCGGAGCCCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014-'14-20,'14-18,15-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATGATTGAGCTGTGCAT
R:
CTGGGACTGGAGACTGGTAGG
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]