RnoEX0071859 @ rn6
Exon Skipping
Gene
ENSRNOG00000015807 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:RGD Symbol;Acc:1303232]
Coordinates
chr1:261962328-261965833:-
Coord C1 exon
chr1:261965679-261965833
Coord A exon
chr1:261964046-261964152
Coord C2 exon
chr1:261962328-261962448
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATGCTTTTCCTGGGCTCCAGTGT
3' ss Score
4.83
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
ACCTATGATTGAGCTCTGCATCCCTTCATCGCTGGACCCCACCCTGGCTCCAACAGGCTGCCATGTCGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGCAAGGTCTGGGACGAGCAAAAGAAAAACACCTACGCAGACAAAG
Seq A exon
TGTTTGACTGCATCGAGGCCTATGCCCCCGGCTTCAAGAGATCTGTGCTGGGCAGAGATATCCTCACCCCACAGGACCTAGAGAGGATCTTCGGGCTTCCTGGAGGG
Seq C2 exon
AACATATTTCATGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGACCAGTGCCCCAACACTCTGACTACAGATGCCCCGTGCAAGGCCTATACCTCTGTGGGAGTGGGGCCCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015807-'22-36,'22-31,24-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000021257fB11712
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCTGCATCCCTTCATCG
R:
CAGAGGTATAGGCCTTGCACG
Band lengths:
246-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]