DreEX0060819 @ danRer10
Exon Skipping
Gene
ENSDARG00000015971 | rapgef1b
Description
Rap guanine nucleotide exchange factor (GEF) 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1001]
Coordinates
chr21:4005994-4011692:+
Coord C1 exon
chr21:4005994-4006143
Coord A exon
chr21:4007261-4007273
Coord C2 exon
chr21:4011630-4011692
Length
13 bp
Sequences
Splice sites
3' ss Seq
CCTTACTGTTTCCTTCTTAGCCA
3' ss Score
7.97
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
TGGGTGTGAAAATCCTCTAACCGAAAGAGAGAAGGCCATCCTGAGTAAGACCACGCCCATTGTCACGCCCACTGACAGCTTGACTGACATGTCAGAGGAGGAGGCTCCACCCAAACCTCCTCTACCAGGACCCAAACTAGCAGAGCACAG
Seq A exon
CCATCAGATTGAG
Seq C2 exon
GAACAGGATGCAGTTGTGCTCCGATCCTGTTACCGGGCAGCGGAGGGCTACGATGATGGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015971-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000123759fB5124
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTCAGAGGAGGAGGCTC
R:
AACAGGATCGGAGCACAACTG
Band lengths:
95-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]