DreEX0060825 @ danRer10
Exon Skipping
Gene
ENSDARG00000015971 | rapgef1b
Description
Rap guanine nucleotide exchange factor (GEF) 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1001]
Coordinates
chr21:4005994-4016447:+
Coord C1 exon
chr21:4005994-4006143
Coord A exon
chr21:4011630-4011692
Coord C2 exon
chr21:4016327-4016447
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTTTGCTTGTCCTGGGACAGGAA
3' ss Score
6.19
5' ss Seq
AACGTACGT
5' ss Score
9.51
Exon sequences
Seq C1 exon
TGGGTGTGAAAATCCTCTAACCGAAAGAGAGAAGGCCATCCTGAGTAAGACCACGCCCATTGTCACGCCCACTGACAGCTTGACTGACATGTCAGAGGAGGAGGCTCCACCCAAACCTCCTCTACCAGGACCCAAACTAGCAGAGCACAG
Seq A exon
GAACAGGATGCAGTTGTGCTCCGATCCTGTTACCGGGCAGCGGAGGGCTACGATGATGGAAAC
Seq C2 exon
TCCACCGGCTCTGCCTCCGAAGAAGCGTCAGTCGGCCCCGTCACCCACCCGTGTGGCAGTGGTGGCCCCGATGAGCCGGGGTCCGTGTAGCCTCAGCCTGCCTCCTGGAGCCCTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015971_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCAAACTAGCAGAGCAC
R:
CTGTCTGAGGGCTCCAGGAG
Band lengths:
144-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]